rs27615336 SNP Detail

Summary

• ID
  rs27615336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173105815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCACACC CTCCTTCCCC
  GTGGAGGCAG GCAGGCCAGG TGAGACGGGT ACAGACAGAG GCGCTCTGGC CTGCCAGCAG
  TGGCTTTGGA GCCACAACAC TCCCAGAAAT GCCAAACCTA CTGCGACGAC AGGCCCTGTC
  CTGTGAGTCT CCCAGGCTGA GACCCAGCTG GAGGCCTTGG CCTGAGACAT GAGGCTCAGA
  Y
  GCAGGTTGCA AAGTGCCTCT CATCTGGAAT TCTACTGAGC CCATTCCCTG GGGGCCCAGC
  CTGGTCCAGG CAGCTCTTCT GCTGAACTGG CTGCTCCTTG GGTTACCCAC ATTCCAGTAC
  TGCGGTCTCA AAGTCACCAG GCCATGTCAA AGGGCTGACA AGCCAGGGGC TGTGTGTAGG
  ACCACAGAAC CCACAGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37824559	NES08702947	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C		T	C	C	T
ss320622145	CHEV_2_173089523	CHEVERUD	SCREENING_POP	f	SNP						C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27615336					SNP	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824559	NES08702947	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173105815 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571914	regulatory region 571914	1791 bp distal
Rr571915	regulatory region 571915	within coordinates
Rr571916	regulatory region 571916	912 bp proximal
Rr571917	regulatory region 571917	1744 bp proximal
Tssr22050	transcription start site region 22050	1028 bp upstream
Tssr27982	transcription start site region 27982	1912 bp downstream