rs27615337 SNP Detail

Summary

• ID
  rs27615337
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173105803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCTGGG GTCACCCACA
  CCCTCCTTCC CCGTGGAGGC AGGCAGGCCA GGTGAGACGG GTACAGACAG AGGCGCTCTG
  GCCTGCCAGC AGTGGCTTTG GAGCCACAAC ACTCCCAGAA ATGCCAAACC TACTGCGACG
  ACAGGCCCTG TCCTGTGAGT CTCCCAGGCT GAGACCCAGC TGGAGGCCTT GGCCTGAGAC
  W
  TGAGGCTCAG ACGCAGGTTG CAAAGTGCCT CTCATCTGGA ATTCTACTGA GCCCATTCCC
  TGGGGGCCCA GCCTGGTCCA GGCAGCTCTT CTGCTGAACT GGCTGCTCCT TGGGTTACCC
  ACATTCCAGT ACTGCGGTCT CAAAGTCACC AGGCCATGTC AAAGGGCTGA CAAGCCAGGG
  GCTGTGTGTA GGACCACAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss37824560	NES08725102	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs27615337					SNP	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824560	NES08725102	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173105803 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571914	regulatory region 571914	1779 bp distal
Rr571915	regulatory region 571915	within coordinates
Rr571916	regulatory region 571916	924 bp proximal
Rr571917	regulatory region 571917	1756 bp proximal
Tssr22050	transcription start site region 22050	1040 bp upstream
Tssr27982	transcription start site region 27982	1924 bp downstream