rs27615562 SNP Detail

Summary

• ID
  rs27615562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148530828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGCCAGG CAAGGTGGCA
  CATGCCTTTT AGTCTAACAC TCCAGAGGCA AGAGGATCGG TCAGTTCAAG GCCAGTCTGG
  TTTACATAGT GAGTTCCAGG ACAGTTGAGG GACTGTCCAG TTTACATAGT GAGGCCCTAT
  CTCAAAACAC CGGAAACAAA ACAAACAGTG AAAAAACAAG TTGAGGCTGG GCAAGGAGGT
  R
  AACACTTGGT AATCCCAGCA GTGGAAGAAG GGGCATGGTG GGGGGTGGGA GTCAGAGACA
  GGTCACAAAT AGGAGGCCCT AAGAAATTCC TTTTATGTCT TTTGTCTGGC ATTTAGACAA
  AACCCAGCAT TCCTCCAGGA GCTTGAAGAC ATAGTTCCTA ATTGCTAAAA GGGGTCATTC
  TTATAAATCT GAGGGCTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
ss37803783	NES09117677	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
rs27615562					SNP	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803783	NES09117677	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148530828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15303	CpG island 15303	1365 bp distal
Cpgi15304	CpG island 15304	1750 bp proximal
Gm69484	predicted gene, 69484	561 bp downstream
Rr398858	regulatory region 398858	1941 bp upstream
Rr604684	regulatory region 604684	1615 bp distal
Rr604685	regulatory region 604685	1110 bp distal
Rr604686	regulatory region 604686	1750 bp proximal
Tssr44605	transcription start site region 44605	1872 bp upstream
Tssr44606	transcription start site region 44606	1632 bp upstream
Tssr44607	transcription start site region 44607	1588 bp upstream
Ubiad1	UbiA prenyltransferase domain containing 1	1611 bp upstream