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rs27615564 SNP Detail
Summary
  • ID
    rs27615564
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:148528805 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTGTG CCTCCAGGAT CGTTCGGGAA
    R
    CCTGTCCTGC TCGGGCCATT CGTTC                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
PWD/PhJ
SM/J
ss37803785 NES09117726 PERLEGEN MM_PANEL2 f SNP A G G A
ss45594873 mCV24215128 ABI CRAMUS_MOUSE f SNP A A G A
ss148007705 ENSMUSSNP3381477 ENSEMBL ENSEMBL_Sanger f SNP A A A
ss321420468 CHEV_4_147818457 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
PWD/PhJ
SM/J
rs27615564 SNP A A A G G A G A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37803785 NES09117726 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:148528805 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi15303 CpG island 15303 within coordinates
Gm23303 predicted gene, 23303 863 bp upstream
Rr604684 regulatory region 604684 387 bp proximal
Rr604685 regulatory region 604685 413 bp proximal
Tssr44605 transcription start site region 44605 107 bp downstream
Tssr44606 transcription start site region 44606 385 bp downstream
Tssr44607 transcription start site region 44607 396 bp downstream
Ubiad1 UbiA prenyltransferase domain containing 1 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory