rs27615565 SNP Detail

Summary

• ID
  rs27615565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148528632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTG ACCAAATTGC CGGCCCCGTG
  Y
  ACAGCCAGGA CAGCCACTGC ACAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss37803786	NES09117725	PERLEGEN	MM_PANEL2	f	SNP			C		T	C	C		C
ss45638166	mCV24215108	ABI	CRAMUS_MOUSE	f	SNP	C	C		T		C
ss148007695	ENSMUSSNP3489172	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321420466	CHEV_4_147818284	CHEVERUD	SCREENING_POP	f	SNP								C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs27615565					SNP	C	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803786	NES09117725	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148528632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15303	CpG island 15303	3 bp proximal
Gm23303	predicted gene, 23303	690 bp upstream
Tssr44605	transcription start site region 44605	280 bp downstream
Tssr44606	transcription start site region 44606	558 bp downstream
Tssr44607	transcription start site region 44607	569 bp downstream
Ubiad1	UbiA prenyltransferase domain containing 1	within coordinates