rs27615566 SNP Detail

Summary

• ID
  rs27615566
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148528371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCATCGG GGGAGCAGTG
  TTCATAATCC ACTGCCAAAC CAGTATTTTC ACAACTTAAG GTTTCAAAGT ATCCACGATA
  CACACATTTT GGATTTCCAG TCAAGTGGCC TACTTTAGTA AGGCGTCTTT GACACGTCTA
  CCATTCCTAT GGAAGGTAGC AGTTTCCAGT TTAGGCAACT GGGACCTTAG AGCAGGAAAC
  W
  GGCCAATTCT TACCTCCTGT GTAGAGAAAG GAGCCAGACA GGCCTCCGAA GTAGATGAGA
  GCCAAGTGTT CCAATTTCAG AGCGGACAGG TAGTAGAGGC AAGCAGCACA GACGCAGCCC
  AAGGTGTAGA GGAAGACTCC AAATCGAACA ACATCCTGGG GCTCCAGAAT TCTGTCCACC
  AAAGTTCTGT CATCACTCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
ss37803788	NES09117723	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
rs27615566					SNP	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803788	NES09117723	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148528371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15303	CpG island 15303	264 bp proximal
Gm23303	predicted gene, 23303	429 bp upstream
Rr604684	regulatory region 604684	821 bp proximal
Rr604685	regulatory region 604685	847 bp proximal
Tssr44605	transcription start site region 44605	541 bp downstream
Tssr44606	transcription start site region 44606	819 bp downstream
Tssr44607	transcription start site region 44607	830 bp downstream
Ubiad1	UbiA prenyltransferase domain containing 1	within coordinates