rs27615567 SNP Detail

Summary

• ID
  rs27615567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148527191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGC CCCTTCTCTG TCCCGCGCCA
  Y
  GGCACTTACC ACCTCTTACA CTCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37803789	NES09117729	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T		C	T	T	T		T
ss148007645	ENSMUSSNP6820479	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss321420457	CHEV_4_147816843	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27615567					SNP	T	T	T	T	T	C	T	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803789	NES09117729	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148527191 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15303	CpG island 15303	1444 bp proximal
Gm23303	predicted gene, 23303	618 bp downstream
Tssr44605	transcription start site region 44605	1721 bp downstream
Tssr44606	transcription start site region 44606	1999 bp downstream
Ubiad1	UbiA prenyltransferase domain containing 1	within coordinates