rs27615773 SNP Detail

Summary

• ID
  rs27615773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148374190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAA AACAGCCCCG AAGTGCCTTG
  Y
  AAATGTCCAG CTCCACCCAA CATAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37804700	NES09104258	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	C	T		C	T	T	T		T
ss45717302	mCV24938589	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss148000322	ENSMUSSNP3330952	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss321418893	CHEV_4_147663842	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27615773					SNP	T	T	T	T	T	T	T	C	C	T	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804700	NES09104258	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148374190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	951 bp distal
Disp3	dispatched RND transporter family member 3	1768 bp upstream
Gm68159	predicted gene, 68159	809 bp downstream
Rr604639	regulatory region 604639	1779 bp distal
Rr604640	regulatory region 604640	1456 bp distal
Rr604641	regulatory region 604641	1558 bp distal
Rr604642	regulatory region 604642	899 bp distal
Rr604643	regulatory region 604643	1415 bp distal
Rr604644	regulatory region 604644	1280 bp distal
Rr604645	regulatory region 604645	1135 bp distal
Rr604646	regulatory region 604646	1385 bp proximal
Rr604647	regulatory region 604647	1994 bp proximal
Tssr44603	transcription start site region 44603	1779 bp upstream