rs27615774 SNP Detail

Summary

• ID
  rs27615774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148374114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAT AGATACTAAG ACCTAGAATG
  R
  CGGGTGTGTA TATTACTGCC ACAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804701	NES09104257	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27615774					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804701	NES09104257	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148374114 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	875 bp distal
Disp3	dispatched RND transporter family member 3	1692 bp upstream
Gm68159	predicted gene, 68159	733 bp downstream
Rr604639	regulatory region 604639	1703 bp distal
Rr604640	regulatory region 604640	1380 bp distal
Rr604641	regulatory region 604641	1482 bp distal
Rr604642	regulatory region 604642	823 bp distal
Rr604643	regulatory region 604643	1339 bp distal
Rr604644	regulatory region 604644	1204 bp distal
Rr604645	regulatory region 604645	1059 bp distal
Rr604646	regulatory region 604646	1461 bp proximal
Tssr44603	transcription start site region 44603	1703 bp upstream