rs27615776 SNP Detail

Summary

• ID
  rs27615776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148373814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG ACCAGAGCCA ATGTTTCTAC
  Y
  CAGGTGTTCT CGTCCCTGCA CCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37804703	NES09104277	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	C	C	C	C	T		C		C	T	C		C
ss45604979	mCV24938578	ABI	CRAMUS_MOUSE	f	SNP		C	T						C
ss148000292	ENSMUSSNP4997544	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C					C
ss321418886	CHEV_4_147663466	CHEVERUD	SCREENING_POP	f	SNP												C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27615776					SNP	C	C	T	C	T	C	C	C	C	C	T	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804703	NES09104277	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148373814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	575 bp distal
Disp3	dispatched RND transporter family member 3	1392 bp upstream
Gm68159	predicted gene, 68159	433 bp downstream
Rr604639	regulatory region 604639	1403 bp distal
Rr604640	regulatory region 604640	1080 bp distal
Rr604641	regulatory region 604641	1182 bp distal
Rr604642	regulatory region 604642	523 bp distal
Rr604643	regulatory region 604643	1039 bp distal
Rr604644	regulatory region 604644	904 bp distal
Rr604645	regulatory region 604645	759 bp distal
Rr604646	regulatory region 604646	1761 bp proximal
Tssr44603	transcription start site region 44603	1403 bp upstream