rs27615778 SNP Detail

Summary

• ID
  rs27615778
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148373265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGAGC CTAGAAACCA
  AGGCTATCCC TGGTTTCATT TCTCTTTCAG TGCTCCAAAG ACATTGGCCT TGATGTCACC
  CAAGGAGAGC CAAGGGAACC CTCAAAAGGA CCTGGCGCCA GCCTCCCGCT GCAGGAGGGA
  CATCACTGCC GGCTGAGAGG CCACCCAGAT GATTATGACA CGGACCAGGA AGATAAGCAT
  K
  TAAGCCACAA TCTTGGCCTT CAAGAAGTCC CCATTCTATA CAAGAGAATG CAGGATCATT
  ATGAAATAAA AATACCGAAA GCCCCTAGCT CTTTGCTGTG TAGCCCATGC CCCCATCTAT
  ATTTTTGAAA GAGGAAACCT AGGGGCCTGG GAAATGGCTT AGCAGGTGTT TGCTGCCAAG
  CCTGACAACC GGAGTTCAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804705	NES09104368	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	T		G	G	G	G	G	G	G	G	G
ss45569216	mCV24938567	ABI	CRAMUS_MOUSE	f	SNP		T	G			G		G
ss148000253	ENSMUSSNP5923783	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27615778					SNP	T	T	G	G	T	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804705	NES09104368	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148373265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	26 bp distal
Disp3	dispatched RND transporter family member 3	843 bp upstream
Gm68159	predicted gene, 68159	within coordinates
Rr604639	regulatory region 604639	854 bp distal
Rr604640	regulatory region 604640	531 bp distal
Rr604641	regulatory region 604641	633 bp distal
Rr604642	regulatory region 604642	within coordinates
Rr604643	regulatory region 604643	490 bp distal
Rr604644	regulatory region 604644	355 bp distal
Rr604645	regulatory region 604645	210 bp distal
Tssr44603	transcription start site region 44603	854 bp upstream