rs27615779 SNP Detail

Summary

• ID
  rs27615779
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148372825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCTGGC TGCCGCTCCC
  CCTGCGGGAG CCGCGTGGTG GTACAGCCAG CTTCCCGTGT TGGCGAGCAG GGACTGAGCA
  CAGCGCAGCG ACCCCTGGGG GTCAGTCTTA GTCTCTGCAA ACGGACCTGG CCATGCCCCC
  TACTGGCCCC CGAGGTTTCT GGGCACCCAG GCCTTTCCCA GGCGTGCGCT CCTGCTGGCT
  K
  CTCTCAGCCC CATCTGCCCA GCCTTGGCAC CTCACCAGCC TGCTGGACAC TCGAGGGCAT
  CCCCGGGTGC CCTCCGGAGG TGGTTGCCAA GCCCAGGCGC CTGGCACCAT CTCTTCCTCC
  CTCCTCTATT CACCTCTCTG GCAGCAGAGC CCAGAGCTCT GCCAGCCCCT GGGACCAGGC
  ACTCGTCCAG TAACAGCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804708	NES09104365	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T		T	T	G	T	T	T	T
ss45727043	mCV24938554	ABI	CRAMUS_MOUSE	f	SNP		G	T					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27615779					SNP	G	G	T	T	T	G	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804708	NES09104365	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148372825 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	within coordinates
Disp3	dispatched RND transporter family member 3	403 bp upstream
Gm68159	predicted gene, 68159	within coordinates
Rr604639	regulatory region 604639	414 bp distal
Rr604640	regulatory region 604640	91 bp distal
Rr604641	regulatory region 604641	193 bp distal
Rr604642	regulatory region 604642	within coordinates
Rr604643	regulatory region 604643	50 bp distal
Rr604644	regulatory region 604644	43 bp proximal
Rr604645	regulatory region 604645	209 bp proximal
Tssr44603	transcription start site region 44603	414 bp upstream