rs27615780 SNP Detail

Summary

• ID
  rs27615780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148372544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCC ACTGGCGCCT CCAGCATCAG
  Y
  GCCTGCGGGC TCTGCGTCAC CGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804709	NES09104364	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27615780					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804709	NES09104364	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148372544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	within coordinates
Disp3	dispatched RND transporter family member 3	122 bp upstream
Gm68159	predicted gene, 68159	180 bp upstream
Rr604639	regulatory region 604639	133 bp distal
Rr604640	regulatory region 604640	within coordinates
Rr604641	regulatory region 604641	67 bp proximal
Rr604642	regulatory region 604642	191 bp proximal
Rr604643	regulatory region 604643	210 bp proximal
Rr604644	regulatory region 604644	324 bp proximal
Rr604645	regulatory region 604645	490 bp proximal
Tssr44603	transcription start site region 44603	133 bp upstream