rs27615784 SNP Detail

Summary

• ID
  rs27615784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148371142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACA AACTGGGGCT TGTGGGAAGA
  Y
  TAGGCTTGTC CACGTGGGAG TGAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37804713	NES09104360	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	T	C	T	C		T	C	C		C
ss148000193	ENSMUSSNP3218027	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss321418873	CHEV_4_147660794	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27615784					SNP	T	T	C	C	C	T	C	T	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804713	NES09104360	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148371142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	35 bp proximal
Disp3	dispatched RND transporter family member 3	within coordinates
Gm68159	predicted gene, 68159	1582 bp upstream
Rr604638	regulatory region 604638	1803 bp distal
Rr604639	regulatory region 604639	within coordinates
Rr604640	regulatory region 604640	1270 bp proximal
Rr604641	regulatory region 604641	1469 bp proximal
Rr604642	regulatory region 604642	1593 bp proximal
Rr604643	regulatory region 604643	1612 bp proximal
Rr604644	regulatory region 604644	1726 bp proximal
Rr604645	regulatory region 604645	1892 bp proximal
Tssr44603	transcription start site region 44603	1242 bp downstream