rs27617845 SNP Detail

Summary

• ID
  rs27617845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170460122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTTTGAG GAGACACATG
  CATGGCTTTT AAATGAGAAG AAGTTCATTC TTGCTGAGCA GTGTGGCCTG CTAGAGGACA
  TGAATAACCA GGAGGGAGCT GGGCTCTTGG GGCTGAGTTA CTAACAAGAG TCCTGTGCTA
  CACGCCCAGT CCTCAGGACG TCAGGACCTC AGGATGGGAG GGATCACGTC TACTAAGATT
  R
  AACTGAGAAC CTCTCACAGA GGCTGAGTCA GAAACTTAGT GCCTGGTCCT AAATGGAACC
  CCCTACCGCC ATCAAGGTTC AGGGACCACC TCAGAAGAGG AGGCAGAGAG AACGTGTGGC
  ACAGAGGTTG GGTAGAGTGC TGTGAAGTGC TGCCTGTGCC CACGACACAC CTTCCACACT
  CCTGGGCTCA TAGCAGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37816967	NES08722157	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617845					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37816967	NES08722157	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170460122 () rs orientation: forward

Symbol	Name	Function Class
Gm74719	predicted gene, 74719	616 bp downstream
Rr571490	regulatory region 571490	746 bp proximal