rs27617846 SNP Detail

Summary

• ID
  rs27617846
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170459989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGACTGT AGCCCTCAAA
  CCATGAGTCA CAACAAACTC TCCTTCTCGA GTTGCCTTCG TCAAGCAGAG CTTTGACCAA
  AAAGTCTCCA AAGCCAATGC AGCAGGATTC TGTCTCCCAA CAGCACGTGC CTGCATGTTT
  GAGGAGACAC ATGCATGGCT TTTAAATGAG AAGAAGTTCA TTCTTGCTGA GCAGTGTGGC
  M
  TGCTAGAGGA CATGAATAAC CAGGAGGGAG CTGGGCTCTT GGGGCTGAGT TACTAACAAG
  AGTCCTGTGC TACACGCCCA GTCCTCAGGA CGTCAGGACC TCAGGATGGG AGGGATCACG
  TCTACTAAGA TTGAACTGAG AACCTCTCAC AGAGGCTGAG TCAGAAACTT AGTGCCTGGT
  CCTAAATGGA ACCCCCTACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37816968	NES08722154	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617846					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37816968	NES08722154	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170459989 () rs orientation: forward

Symbol	Name	Function Class
Gm74719	predicted gene, 74719	749 bp downstream
Rr571490	regulatory region 571490	879 bp proximal