rs27617848 SNP Detail

Summary

• ID
  rs27617848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170459512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTGCTT TTATATTAGA
  ATGAAGATGA ATATGCCCTA AGTGGAGAAT TTCTCCCTTT TAAGCCTCAA TATTTTAGTC
  TCAATATTTA TAGATTACTA AATAAAATAA GTCTGCTTAT GTTTGTATGA AAGCGAAACC
  CTCCAAAATA TATCAATAGC GTCAAAGGAT AGTTCATCCT CACTGTCCAC ATAACTGGAC
  R
  TAGAATTACC TAGAAGATGT AGCCCTGTGT CTGCAAAGGT TTAACCTGAG GAAGGAAGAC
  CTGTGCTAAA TGTAGATGGT GCCATCCCGT GGGCCAGACC CAGACTGAAC AGAAAGGAGA
  AAAAAGCTGC TCACAGCATC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37816970	NES08722162	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617848					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37816970	NES08722162	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170459512 () rs orientation: forward

Symbol	Name	Function Class
Gm74719	predicted gene, 74719	1226 bp downstream
Rr571490	regulatory region 571490	1356 bp proximal