rs27617850 SNP Detail

Summary

• ID
  rs27617850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170459313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAGCCAG GGCTACTCTG
  AGAAATCCTA TCTCAAATAA AACAAGAAAA AACAAAACAA AACAGACAAA ACAAAAAACA
  AACAAAAAAA GAATAAGAAA AAAAAAATCA AAGCCTCAGA TGTGTACCTT GTAGGTATAT
  TTCTTTCTGC TTAGGTTGAC CAAAGTGCGT TTTCTTCCTT GAAATTAAAA ACATACTAGT
  Y
  TTCTGCTTTT ATATTAGAAT GAAGATGAAT ATGCCCTAAG TGGAGAATTT CTCCCTTTTA
  AGCCTCAATA TTTTAGTCTC AATATTTATA GATTACTAAA TAAAATAAGT CTGCTTATGT
  TTGTATGAAA GCGAAACCCT CCAAAATATA TCAATAGCGT CAAAGGATAG TTCATCCTCA
  CTGTCCACAT AACTGGACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37816972	NES08722160	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27617850					SNP	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37816972	NES08722160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170459313 () rs orientation: forward

Symbol	Name	Function Class
Gm74719	predicted gene, 74719	1425 bp downstream
Rr571490	regulatory region 571490	1555 bp proximal