rs27618381 SNP Detail

Summary

• ID
  rs27618381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135354966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTC AGAAAAGAGA GGCTGATCAC
  R
  GGTCCCCTGT CACTAGGAGG TAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37779209	NES09162356	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	G	A	G	G	G		G	A	G		A
ss45621936	mCV22567698	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G
ss147548772	ENSMUSSNP5630074	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss321352737	CHEV_4_135183570	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27618381					SNP	A	A	G	A	G	G	A	G	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779209	NES09162356	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135354966 () rs orientation: forward

Symbol	Name	Function Class
1700029M20Rik	RIKEN cDNA 1700029M20 gene	within coordinates
Cpgi15077	CpG island 15077	658 bp distal
Gm69371	predicted gene, 69371	1053 bp upstream
Gm69375	predicted gene, 69375	462 bp upstream
Tssr39623	transcription start site region 39623	954 bp downstream
Tssr39624	transcription start site region 39624	944 bp downstream
Tssr39625	transcription start site region 39625	914 bp downstream
Tssr39626	transcription start site region 39626	849 bp downstream
Tssr39627	transcription start site region 39627	823 bp downstream