rs27618384 SNP Detail

Summary

• ID
  rs27618384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135354767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATGGGGC AGCTCAGAGC
  TCTGTGTCTA TGAAGGGAGG TTATGTTTCC TTCTCCAGTG GACCTTCCCA GACCCTCAGG
  TGAGCTCCAG ACTCCACAAG GACACCCCTG AATCGACGGA CGTCTCTCCT TATTTCCTTG
  AGTGATCTGC ATTTCTCTCA GAATTGTGAA GGGAGCAGAT GGAACGGGTA AAAACCTACC
  Y
  GGGCTTTCAA AGCCCTATTC AGTTCTCTGA TACCCGAACC CTGAGGCACC AGCACACTTT
  CTTACCCAGA TACCTGCTGG GGTAATAATG TTGTCAATAT TGTGTTCCTG CCCTGTCTGC
  TGGCCCTGGC CTGGGCTGAC CCTCTCCTCT CAAGATAGAC CCATCCCTTT AGCGGTTCAG
  AAAAGAGAGG CTGATCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779212	NES09162349	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27618384					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779212	NES09162349	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135354767 () rs orientation: forward

Symbol	Name	Function Class
1700029M20Rik	RIKEN cDNA 1700029M20 gene	within coordinates
Cpgi15077	CpG island 15077	459 bp distal
Gm69371	predicted gene, 69371	854 bp upstream
Gm69375	predicted gene, 69375	263 bp upstream
Tssr39623	transcription start site region 39623	755 bp downstream
Tssr39624	transcription start site region 39624	745 bp downstream
Tssr39625	transcription start site region 39625	715 bp downstream
Tssr39626	transcription start site region 39626	650 bp downstream
Tssr39627	transcription start site region 39627	624 bp downstream