rs27618391 SNP Detail

Summary

• ID
  rs27618391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135352433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGGAGG CCTGTGAGGA
  GTGGAAGGAT GGCATCTGAG GAGGCTTCAG CACAGGAGCC ATCGTTGTAG CAGGGGCTCT
  GTGGGATCAC ATGGGCATTG CTACTGAGAT CCAAGGGGAT GTAGGATGCA GGGAGGAAAT
  CTGTGCCCTC AGGGAGTGTA CAGATGCAGA GAGGTGCAGA AAGGCCCGGA GGCATAGAGC
  Y
  GTGAAGAACA GAGCAGAACA TTTGCTGATT TCATTCACTC TCATGCAAGA GCAGATTGGT
  GAGATGAGTT TAAACTCAAG TAGCTTATTA AAAGTGAGTT ATTGATCTGG AGGGCAGTGT
  GGAATCCAGA GTCAGGTAAC TTAGAAAAAT CCATCCCCCC TTGAACTCAG TTTTCCAAAC
  TGTCAAGCCC TTCCTTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779219	NES09162415	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27618391					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779219	NES09162415	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135352433 () rs orientation: forward

Symbol	Name	Function Class
1700029M20Rik	RIKEN cDNA 1700029M20 gene	1533 bp upstream
Cpgi15077	CpG island 15077	1658 bp proximal
Gm69371	predicted gene, 69371	within coordinates
Gm69375	predicted gene, 69375	within coordinates
Rr602082	regulatory region 602082	948 bp distal
Tssr39623	transcription start site region 39623	1568 bp upstream
Tssr39624	transcription start site region 39624	1580 bp upstream
Tssr39625	transcription start site region 39625	1609 bp upstream
Tssr39626	transcription start site region 39626	1640 bp upstream
Tssr39627	transcription start site region 39627	1690 bp upstream