rs27619958 SNP Detail

Summary

• ID
  rs27619958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:169878048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGGTGG TGACCACCAC
  CATCCTATGA TTCCAGGATC TTTTAATACT TCATAGTACC TAGCATTTTG TCCCTGTAAG
  CTCTGCCCAG ACCCTCTTCC TGCCCTGACT GTTCTTCACA GCTGAGTCCT TGAAAATACT
  GGAGAACAAA AGTGACTCAG ATTTTGATAT ATTTGCATAT GTATGACAGG ATCTGTTAAA
  Y
  GCAAGCTCGT TCTAAACCCA AAACACATTT ATGTTTCATA TACACATGGC TCACCACTAC
  TTCTGAAATG GTATTTGGTT TGAGACAGGT TCTCACTGTG TAGCCCTGGC TGTCCTGGAA
  CTCCCTCTGT AGACCAGGCT GGGCTGGAAC TCACAAAGAT CTGCCTGCCT CCGCCTCCCA
  AGTGCTGGGA TTAAAGGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37819007	NES08709358	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27619958					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37819007	NES08709358	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169878048 () rs orientation: forward

Symbol	Name	Function Class
Rr571301	regulatory region 571301	543 bp proximal
Tshz2	teashirt zinc finger family member 2	Intron