rs27622653 SNP Detail

Summary

• ID
  rs27622653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172745459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGAGAGCA CGTCGGGGAT
  GCAGAATCTT TGCCGATTAT CCCCCTCACC CTTCACACCT TCCACACCTT TATTCTGTTG
  GGCATGATGG GGAGGTGGGA GGGAGAGAGA AGGAGGCAGA GGGGCAGGGA ACAGAACGAA
  CAAGCATTTC CAGGCTAGCA TGATGTCATG TGGGTAGAGC ACTCGTGAGT CAGGAGAGAA
  Y
  TGGATGGTAT ACCTGGAGCC AGCCCAGCAC GTACACTCCA GGCTCAGGGA GACCCAGGAG
  GCAGATCAAA GTCCTGAGGC CAAGTTGGCC CTGCAGGGTT GGGTCACCAG GCGCCTGGAG
  CTGCCCACCT CAGTGTTAGG AAATGCCCTG CTTTTCCAAC AAGGGCCTAA ATGGTCCTGG
  CGTCCCGGAG ACTGGCCGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825976	NES08714862	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27622653					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825976	NES08714862	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172745459 () rs orientation: forward

Symbol	Name	Function Class
Bmp7	bone morphogenetic protein 7	Intron
Rr571767	regulatory region 571767	1436 bp distal
Rr571769	regulatory region 571769	within coordinates
Rr571770	regulatory region 571770	1499 bp proximal
Tssr27952	transcription start site region 27952	1680 bp upstream