rs27622665 SNP Detail

Summary

• ID
  rs27622665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172743701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAGCCT CCAGCCATTC
  CCTTGGGGAT GCCCACATGT CCTCATATCA AGACGACCAA GAACAGTCTT TTTCTTGAAA
  GAAATAAAAG ATCCAAGGGC CCCTCTGGAA AGTCTAAAAG CAATCAACCG CAGTGAAGGC
  CTGTTTCAGA ACCACCTTGG GGAACATACC TTATTTGATT CCTGCCAGAG GGTCCAGCAC
  Y
  CAGGGCCGTG AGGGCCCAGG AGGACCTTGA AGTCCCTGCA AGACATCTGA GTTGCAGCTG
  AGAATGGGGA GTTTCTGTGT CAATGTTGTT GGTGGTGGCT GGAAGGGAGG GAGAATCTGG
  GTGGTTGCCA CACTCTTAAA GAGATACCAC TAAAAGTGTT CTCAAAGCAC ACATGGGGGT
  GTAGGCCTAC AGTCCCAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825989	NES08714895	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27622665					SNP	T	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825989	NES08714895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172743701 () rs orientation: forward

Symbol	Name	Function Class
Bmp7	bone morphogenetic protein 7	Intron
Rr571767	regulatory region 571767	within coordinates
Rr571768	regulatory region 571768	868 bp distal
Rr571769	regulatory region 571769	1362 bp proximal
Tssr27952	transcription start site region 27952	64 bp downstream