rs27623131 SNP Detail

Summary

• ID
  rs27623131
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136014683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTTGTGTG ATTTCAGGCC
  CCTGTGACAT TTGAAGATAT GGCCATGTAC CTCACTCGGG AAGAATGGAG ACCTCTGGAT
  CCTACACAGA GAGATCTTTA CAGGGATGTG ATGCAGGAGA ATTACGGAAA TGTTGTCTCA
  CTGGGTGAGT GAGGACTTTT ATCTTGTCTT ACCTCTTAGG GGTTTTGAAA CTGTCAGAAC
  R
  GCTTAGGTCT TTTCGATACA GCCTTGTTTG TTGTTAAGGA AAACCACACG GTTAGTTACC
  TGCTTTGGTG CTCATTCAAA TCTTTAAGTG TGGGAAGATC CGTGTTTCCC AGTCTTAAAT
  GAAAAGTAAA GTTTCTGCCG TTTCCGAGAC TCTGAGGATT CTCGTGCCCT GAGTCATTAG
  CGGCTCTGTG GCCTGTTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777165	NES09155536	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623131					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777165	NES09155536	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136014683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	839 bp distal
Rr398613	regulatory region 398613	1826 bp downstream
Rr602341	regulatory region 602341	1295 bp distal
Rr602342	regulatory region 602342	612 bp distal
Rr602343	regulatory region 602343	488 bp proximal
Rr602344	regulatory region 602344	1192 bp proximal
Tssr39697	transcription start site region 39697	1258 bp downstream
Tssr39698	transcription start site region 39698	1222 bp downstream
Tssr39699	transcription start site region 39699	1182 bp downstream
Zfp46	zinc finger protein 46	Intron