rs27623132 SNP Detail

Summary

• ID
  rs27623132
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136014682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAG GGGTTTTGAA ACTGTCAGAA
  Y
  GGCTTAGGTC TTTTCGATAC AGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37777166	NES09155535	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	C		C	T	T	C		T
ss147564624	ENSMUSSNP2667121	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss321354909	CHEV_4_135843286	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27623132					SNP	C	C	T	T	T	T	T	C	T	T	C	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777166	NES09155535	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136014682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	838 bp distal
Rr398613	regulatory region 398613	1825 bp downstream
Rr602341	regulatory region 602341	1294 bp distal
Rr602342	regulatory region 602342	611 bp distal
Rr602343	regulatory region 602343	489 bp proximal
Rr602344	regulatory region 602344	1193 bp proximal
Tssr39697	transcription start site region 39697	1257 bp downstream
Tssr39698	transcription start site region 39698	1221 bp downstream
Tssr39699	transcription start site region 39699	1181 bp downstream
Zfp46	zinc finger protein 46	Intron