rs27623133 SNP Detail

Summary

• ID
  rs27623133
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136014633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGAAGA AAAGCTGGTT
  CTAAACTCCT AGATACCAAG TAGTGAGGAA GCGTTGTGTG ATTTCAGGCC CCTGTGACAT
  TTGAAGATAT GGCCATGTAC CTCACTCGGG AAGAATGGAG ACCTCTGGAT CCTACACAGA
  GAGATCTTTA CAGGGATGTG ATGCAGGAGA ATTACGGAAA TGTTGTCTCA CTGGGTGAGT
  K
  AGGACTTTTA TCTTGTCTTA CCTCTTAGGG GTTTTGAAAC TGTCAGAACG GCTTAGGTCT
  TTTCGATACA GCCTTGTTTG TTGTTAAGGA AAACCACACG GTTAGTTACC TGCTTTGGTG
  CTCATTCAAA TCTTTAAGTG TGGGAAGATC CGTGTTTCCC AGTCTTAAAT GAAAAGTAAA
  GTTTCTGCCG TTTCCGAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777167	NES09155534	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G	G	G	G	G	T	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623133					SNP	T	G	G	G	G	G	G	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777167	NES09155534	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136014633 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15107	CpG island 15107			789 bp distal
Rr398613	regulatory region 398613			1776 bp downstream
Rr602341	regulatory region 602341			1245 bp distal
Rr602342	regulatory region 602342			562 bp distal
Rr602343	regulatory region 602343			538 bp proximal
Rr602344	regulatory region 602344			1242 bp proximal
Tssr39697	transcription start site region 39697			1208 bp downstream
Tssr39698	transcription start site region 39698			1172 bp downstream
Tssr39699	transcription start site region 39699			1132 bp downstream
Zfp46	zinc finger protein 46			Intron
				Splice-Site