rs27623135 SNP Detail

Summary

• ID
  rs27623135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136014295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGTGTGG GAAATAGTAA
  GTCGAGGAGT GGTTAATTCT AGATGTGGTG TCCAAGGATG GAGCGAAGAG TGATAAAGGG
  TGGGGAGAAA CAGAACAGCA GTTGGCTCTA GAACTGGGCC ATAAAGACGA GAATTTCACT
  GGTCTAAGAA AAGGAGAGCC TTGTATGTAA GGGTCCAAAG TGGGCAGGGA CGGCCTGAGC
  R
  GGAAGCTAGT AGATTGCCCC TGTCTTTTGA CCACATGTCT TTTTTTCTTC TTTCTTTATT
  ATTTTTTTTT TCCTTCGGAC TCTACAGATG AGACTTAATG CCACTGCCTT CTCGACATTT
  CTAACCATGT CTCTAATTTC AAGAAGAAAA GCTGGTTCTA AACTCCTAGA TACCAAGTAG
  TGAGGAAGCG TTGTGTGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777169	NES09155621	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	A	A	G	G	A	G
ss45669746	mCV25110783	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623135					SNP	A	A	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777169	NES09155621	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136014295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	451 bp distal
Rr398613	regulatory region 398613	1438 bp downstream
Rr602341	regulatory region 602341	907 bp distal
Rr602342	regulatory region 602342	224 bp distal
Rr602343	regulatory region 602343	876 bp proximal
Rr602344	regulatory region 602344	1580 bp proximal
Tssr39697	transcription start site region 39697	870 bp downstream
Tssr39698	transcription start site region 39698	834 bp downstream
Tssr39699	transcription start site region 39699	794 bp downstream
Zfp46	zinc finger protein 46	Intron