rs27623139 SNP Detail

Summary

• ID
  rs27623139
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136013943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACGCTTGA GCCCGAGATG
  GCAGCCACCC TGCTCATGTC TGGGACTCAG GTAAGCCCCG AGGGCTCTGC TTACCCATCT
  TGCCCGGTGT TTCCCCGTCT GCAAACCCCT ATAGGAAATT CCCTGGGATA AGCTCATTTT
  GCTATTCTGC TTAGTATACG GGCTTCGAGT TGGCTAATAT AACCATATAC AAGCATATAT
  M
  GAACACCCAC TGTAAGACTA AATACTGAGG AGAATAAAAC CAAACAAGAT GGGTGGTACC
  CTTCTTGCCA ACAATCTGTA GGGAGAACGG TGTGTCCGGT TAACCTGGAT GCGATATGGT
  AAGTATTCTG TTGGCCTGAG CAAGGACGTA TTGTGGTGTG GGAAATAGTA AGTCGAGGAG
  TGGTTAATTC TAGATGTGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777173	NES09155614	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	A	C	A	A	C	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623139					SNP	C	A	A	A	A	A	C	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777173	NES09155614	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136013943 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	99 bp distal
Rr398613	regulatory region 398613	1086 bp downstream
Rr602341	regulatory region 602341	555 bp distal
Rr602342	regulatory region 602342	within coordinates
Rr602343	regulatory region 602343	1228 bp proximal
Rr602344	regulatory region 602344	1932 bp proximal
Tssr39694	transcription start site region 39694	1980 bp downstream
Tssr39695	transcription start site region 39695	1946 bp downstream
Tssr39696	transcription start site region 39696	1915 bp downstream
Tssr39697	transcription start site region 39697	518 bp downstream
Tssr39698	transcription start site region 39698	482 bp downstream
Tssr39699	transcription start site region 39699	442 bp downstream
Zfp46	zinc finger protein 46	Intron