rs27623140 SNP Detail

Summary

• ID
  rs27623140
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136013872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGTCCTGC TTTTCGCCTC
  CTTCAACGTT GTCTGCTAGC TGGTTTTCCT GCTCTCTCTC TCCCAGGAGA CGAACGCTTG
  AGCCCGAGAT GGCAGCCACC CTGCTCATGT CTGGGACTCA GGTAAGCCCC GAGGGCTCTG
  CTTACCCATC TTGCCCGGTG TTTCCCCGTC TGCAAACCCC TATAGGAAAT TCCCTGGGAT
  W
  AGCTCATTTT GCTATTCTGC TTAGTATACG GGCTTCGAGT TGGCTAATAT AACCATATAC
  AAGCATATAT AGAACACCCA CTGTAAGACT AAATACTGAG GAGAATAAAA CCAAACAAGA
  TGGGTGGTAC CCTTCTTGCC AACAATCTGT AGGGAGAACG GTGTGTCCGG TTAACCTGGA
  TGCGATATGG TAAGTATTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37777174	NES09155612	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27623140					SNP	T	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777174	NES09155612	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136013872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	28 bp distal
Rr398613	regulatory region 398613	1015 bp downstream
Rr602340	regulatory region 602340	1985 bp distal
Rr602341	regulatory region 602341	484 bp distal
Rr602342	regulatory region 602342	within coordinates
Rr602343	regulatory region 602343	1299 bp proximal
Tssr39694	transcription start site region 39694	1909 bp downstream
Tssr39695	transcription start site region 39695	1875 bp downstream
Tssr39696	transcription start site region 39696	1844 bp downstream
Tssr39697	transcription start site region 39697	447 bp downstream
Tssr39698	transcription start site region 39698	411 bp downstream
Tssr39699	transcription start site region 39699	371 bp downstream
Zfp46	zinc finger protein 46	Intron