rs27623141 SNP Detail

Summary

• ID
  rs27623141
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136013584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGA CTCTTCGGGA GTCAGAGAGG
  M
  GAGTGACCAG TCCTGGGCCT TCCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37777175	NES09155610	PERLEGEN	MM_PANEL2	f	SNP	A		C		A	A		A	C	A
ss45683188	mCV25110794	ABI	CRAMUS_MOUSE	f	SNP	A	C		A
ss147564615	ENSMUSSNP5030264	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321354907	CHEV_4_135842188	CHEVERUD	SCREENING_POP	f	SNP							C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27623141					SNP	A	C	C	A	A	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777175	NES09155610	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136013584 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15107	CpG island 15107			within coordinates
Rr398613	regulatory region 398613			727 bp downstream
Rr602340	regulatory region 602340			1697 bp distal
Rr602341	regulatory region 602341			196 bp distal
Rr602342	regulatory region 602342			within coordinates
Rr602343	regulatory region 602343			1587 bp proximal
Tssr39694	transcription start site region 39694			1621 bp downstream
Tssr39695	transcription start site region 39695			1587 bp downstream
Tssr39696	transcription start site region 39696			1556 bp downstream
Tssr39697	transcription start site region 39697			159 bp downstream
Tssr39698	transcription start site region 39698			123 bp downstream
Tssr39699	transcription start site region 39699			83 bp downstream
Zfp46	zinc finger protein 46			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant