rs27623142 SNP Detail

Summary

• ID
  rs27623142
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136013571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAC GGAGAGTGGG TGACTCTTCG
  S
  GAGTCAGAGA GGAGAGTGAC CAGTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37777176	NES09155608	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C		G	C	G		G	C	C	G		C
ss45626548	mCV25110795	ABI	CRAMUS_MOUSE	f	SNP	G	C					G
ss147564609	ENSMUSSNP1708291	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321354906	CHEV_4_135842175	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27623142					SNP	G	C	C	C	C	C	G	G	C	G	C	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777176	NES09155608	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136013571 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15107	CpG island 15107			within coordinates
Rr398613	regulatory region 398613			714 bp downstream
Rr602340	regulatory region 602340			1684 bp distal
Rr602341	regulatory region 602341			183 bp distal
Rr602342	regulatory region 602342			within coordinates
Rr602343	regulatory region 602343			1600 bp proximal
Tssr39694	transcription start site region 39694			1608 bp downstream
Tssr39695	transcription start site region 39695			1574 bp downstream
Tssr39696	transcription start site region 39696			1543 bp downstream
Tssr39697	transcription start site region 39697			146 bp downstream
Tssr39698	transcription start site region 39698			110 bp downstream
Tssr39699	transcription start site region 39699			70 bp downstream
Zfp46	zinc finger protein 46			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant