rs27623143 SNP Detail

Summary

• ID
  rs27623143
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136013521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGCTTCT GATTGGTCAG
  ATATTTTACG ATTTCTTTTC GCTGATTGGC TGGGATTGCT GCCGGAAAGG TCCCAGCCCG
  GAGATGGCAG AGCAGAGGCG TTCTATGGGC TGGGTTGAAA GCCTCCTCCC TTGAATTGCA
  TCGGCCTGAC CCCCCAGCCT AGGGGGCACC CAGCCAGTGC CTGCCCTCTC CTACCCTAAC
  S
  TTGCACGTAC TCGATATTAA CCGAGACACG GAGAGTGGGT GACTCTTCGG GAGTCAGAGA
  GGAGAGTGAC CAGTCCTGGG CCTTCCCCTC ATACCCTGCG ACCAGAACTC CAGCCCTAGG
  GAGTAGTGGG CAGGGCCTCT TGCCGCGCCT CACGTCCTGC TTTTCGCCTC CTTCAACGTT
  GTCTGCTAGC TGGTTTTCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777177	NES09155606	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623143					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777177	NES09155606	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136013521 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15107	CpG island 15107			within coordinates
Rr398613	regulatory region 398613			664 bp downstream
Rr602340	regulatory region 602340			1634 bp distal
Rr602341	regulatory region 602341			133 bp distal
Rr602342	regulatory region 602342			within coordinates
Rr602343	regulatory region 602343			1650 bp proximal
Tssr39694	transcription start site region 39694			1558 bp downstream
Tssr39695	transcription start site region 39695			1524 bp downstream
Tssr39696	transcription start site region 39696			1493 bp downstream
Tssr39697	transcription start site region 39697			96 bp downstream
Tssr39698	transcription start site region 39698			60 bp downstream
Tssr39699	transcription start site region 39699			20 bp downstream
Zfp46	zinc finger protein 46			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant