rs27623144 SNP Detail

Summary

• ID
  rs27623144
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136013343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCACTGGT CTTGAAGGTC
  GCGGTCCTGT CTCTTCCCTT TTGTTCTTTT CCCTCCCCTG CTCTTGGCTG CTAAGTGGCC
  TTTGTACGCC AGAGTGAAAC TCCAAGTCCC GTCAGGCCGC GAGGTGCGCG CACGCGTGAT
  GGAGCTACCC GGCCACGCCG CAGGAGGAGG GCTGATGGTT TGGCTTCTGA TTGGTCAGAT
  M
  TTTTACGATT TCTTTTCGCT GATTGGCTGG GATTGCTGCC GGAAAGGTCC CAGCCCGGAG
  ATGGCAGAGC AGAGGCGTTC TATGGGCTGG GTTGAAAGCC TCCTCCCTTG AATTGCATCG
  GCCTGACCCC CCAGCCTAGG GGGCACCCAG CCAGTGCCTG CCCTCTCCTA CCCTAACGTT
  GCACGTACTC GATATTAACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777178	NES09155605	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	A		C	A	A	C	C	A	A	C	A
ss45703165	mCV25110901	ABI	CRAMUS_MOUSE	f	SNP	C	A					A
ss147564605	ENSMUSSNP6681919	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623144					SNP	C	A	A	A	A	A	A	C	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777178	NES09155605	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136013343 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15107	CpG island 15107			within coordinates
Rr398613	regulatory region 398613			486 bp downstream
Rr602340	regulatory region 602340			1456 bp distal
Rr602341	regulatory region 602341			within coordinates
Rr602342	regulatory region 602342			46 bp proximal
Rr602343	regulatory region 602343			1828 bp proximal
Tssr39694	transcription start site region 39694			1380 bp downstream
Tssr39695	transcription start site region 39695			1346 bp downstream
Tssr39696	transcription start site region 39696			1315 bp downstream
Tssr39697	transcription start site region 39697			29 bp upstream
Tssr39698	transcription start site region 39698			83 bp upstream
Tssr39699	transcription start site region 39699			146 bp upstream
Zfp46	zinc finger protein 46			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant