rs27623145 SNP Detail

Summary

• ID
  rs27623145
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136012973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCGTGG GATATGTAGT
  CTGGGGTGGG TTGTGACTGC CGGAAGGCCT ACTGGGAGTT GTAGTTCTCA GTATCCAGAA
  AGCGAGAGCT TCAGGCGGTG TTGGGAGTCC GTGGGCGGGG CCCAAAGTTC CATCCCGGCC
  AGGGAGTCTC CCAAGGGAGG GAAAAGAAGC CTTTTCCCGC TCTGGCCTGG GCTGTCAAAT
  R
  AGGGGTGATC TCAGCTGAGG TCAGCCCGAG CTTCCACACT CAATCTAACC TCGCGGATAA
  TATATGACTC AAAGATGGTC GTAGGGCCAT GAGAAAAAAA AAAAAACACA GACGCTTCCT
  TTGCTGAGTC GTGCTGTGGT TTCCGAGAAA AAAGTATGTG TGGGGGTATT CTCACTGGTC
  TTGAAGGTCG CGGTCCTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777179	NES09155603	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	A	G	G	A	G
ss45681329	mCV25110910	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss147564599	ENSMUSSNP4227134	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623145					SNP	A	A	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777179	NES09155603	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136012973 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15107	CpG island 15107			158 bp proximal
Rr398613	regulatory region 398613			116 bp downstream
Rr602340	regulatory region 602340			1086 bp distal
Rr602341	regulatory region 602341			within coordinates
Rr602342	regulatory region 602342			416 bp proximal
Tssr39694	transcription start site region 39694			1010 bp downstream
Tssr39695	transcription start site region 39695			976 bp downstream
Tssr39696	transcription start site region 39696			945 bp downstream
Tssr39697	transcription start site region 39697			399 bp upstream
Tssr39698	transcription start site region 39698			453 bp upstream
Tssr39699	transcription start site region 39699			516 bp upstream
Zfp46	zinc finger protein 46			Intron
				Noncoding-Transcript-Variant