rs27623149 SNP Detail

Summary

• ID
  rs27623149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136012269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATCCCC GCTAGGGAAA
  GGAAAGGCTA CAAGTCCTTC CATTTGGAGG ATTCTGAGTG AATGCAGCAT AGCCAACGCT
  GATGTTTCTT GGCCAGCTGT TGTGGCCTCG GAGATCTGTT TATGAGATTG TTGTTTCCCG
  GAGCTATAGA ACAGTCTCTG CAGTCTTGAA GCTTTGTGCT CATCCTACAA CCAAACCCTG
  Y
  CCTTTGCCTG TTAATCCATG GATTCGGATT TCTATTCATG GCCCTGAGAT CTCTGGAATC
  TGCTGGTGAT ATCTAGAACC TTTCTGAACG TCAGGCCTCT TTAGATCTCT GAGGAGCCAG
  CGACCACAGA CCAGGAGGTA AGCCTGTCCG TTCTGTCCTA ATCTGGTTTT GTGATTTCTT
  TGAAACAGAG ACTACTAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777183	NES09155597	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623149					SNP	T	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777183	NES09155597	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136012269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	862 bp proximal
Rr398613	regulatory region 398613	287 bp upstream
Rr602339	regulatory region 602339	1556 bp distal
Rr602340	regulatory region 602340	382 bp distal
Rr602341	regulatory region 602341	619 bp proximal
Rr602342	regulatory region 602342	1120 bp proximal
Tssr39694	transcription start site region 39694	306 bp downstream
Tssr39695	transcription start site region 39695	272 bp downstream
Tssr39696	transcription start site region 39696	241 bp downstream
Tssr39697	transcription start site region 39697	1103 bp upstream
Tssr39698	transcription start site region 39698	1157 bp upstream
Tssr39699	transcription start site region 39699	1220 bp upstream
Zfp46	zinc finger protein 46	mRNA-UTR