rs27623151 SNP Detail

Summary

• ID
  rs27623151
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136011657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCTGAA AGATACCCAG
  CCTAGGTCTG TCCAATCTTT ATGCCCATAT TCTGGCTGTT GTAAATCCTT CAGGATTCTA
  ACTCACATGG TGGCTGGATA CATTTTACAG TAGGTAGAAT AGTGCAATTT TGTGGCATCG
  AAACATTTTT TAGTCCTACC CTTGGGAGCA CAAGAGAAGC ACAGGTAGAA GAGATTCATT
  R
  TGGCTGGTAG GGGTCCTGCT AGTTTGTTTT TTTTTTAGAC CCCTGAGTCA TGTAGCCATA
  AATAACTGGG CATTGGGAAC AGAACACTCT AATAAAAGCA TGGCCGGGAA TCTTATTTGG
  AAAAAAAAAA TTCCCCAAGT CCTTCAGTGT GTGTGGATGT ATCTGTAAAA CAAAAGAAAA
  GTCCCTTTTC CCAGCCTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777185	NES09155595	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	A	A	G	G	A	G
ss45622205	mCV25110935	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss147564560	ENSMUSSNP2433538	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623151					SNP	A	A	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777185	NES09155595	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136011657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	1474 bp proximal
Rr398613	regulatory region 398613	899 bp upstream
Rr602339	regulatory region 602339	944 bp distal
Rr602340	regulatory region 602340	within coordinates
Rr602341	regulatory region 602341	1231 bp proximal
Rr602342	regulatory region 602342	1732 bp proximal
Tssr39694	transcription start site region 39694	291 bp upstream
Tssr39695	transcription start site region 39695	312 bp upstream
Tssr39696	transcription start site region 39696	362 bp upstream
Tssr39697	transcription start site region 39697	1715 bp upstream
Tssr39698	transcription start site region 39698	1769 bp upstream
Tssr39699	transcription start site region 39699	1832 bp upstream
Zfp46	zinc finger protein 46	mRNA-UTR