rs27623154 SNP Detail

Summary

• ID
  rs27623154
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136010931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGC TTACAACTGT GGTATTTTAC
  K
  AACGTGGCAT AATAATTCAA GAGAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37777188	NES09155640	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	G	T	T	G		G	T	T	G		T
ss147564545	ENSMUSSNP3649033	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321354898	CHEV_4_135839535	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27623154					SNP	G	T	T	T	T	T	G	T	T	G	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777188	NES09155640	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136010931 () rs orientation: forward

Symbol	Name	Function Class
Rr398613	regulatory region 398613	1625 bp upstream
Rr602339	regulatory region 602339	218 bp distal
Rr602340	regulatory region 602340	4 bp proximal
Rr602341	regulatory region 602341	1957 bp proximal
Tssr39694	transcription start site region 39694	1017 bp upstream
Tssr39695	transcription start site region 39695	1038 bp upstream
Tssr39696	transcription start site region 39696	1088 bp upstream
Zfp46	zinc finger protein 46	1063 bp upstream