rs27623157 SNP Detail

Summary

• ID
  rs27623157
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136010456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACTAGGG GCAAGCTGAC
  AAGCAGGGCA CACAGAGCCA TCCTGCTCGC GGGCACAGCC CTTAGGAATA AAAGGAAAAG
  CAGGAGGGAC AAAAGAGGGT TTAAAGCTTG GCAGCAGCGG GACAAAAGGC CTCAGAGTTT
  ACAAAAGAGC CTTGAGAGGG AGGCCCTTCC AGGGAGGGAC CTGACTTAAG CAGACTGCCT
  Y
  AACACCAGTC ACTCTCCTTG TTCTAGGAGT TTGGTTATTG ACCCCTGACT CCGCTTTCTC
  TGAATGAGGC CTCAATTTGC TGGGTTACTA GTAATCCCAG GTAGGCTCTA CGGACCACTC
  ACTTGACACC GCCCACTGGC TGTATTTCCA GCGGAAATAG TGTGAAGATA AGGTCATCCC
  AGAGTGGACT TCCCAGACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37777191	NES09155678	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	T	C	C	C
ss147564524	ENSMUSSNP6309722	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27623157					SNP	T	T	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777191	NES09155678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136010456 () rs orientation: forward

Symbol	Name	Function Class
Rr602339	regulatory region 602339	within coordinates
Rr602340	regulatory region 602340	479 bp proximal
Tssr39694	transcription start site region 39694	1492 bp upstream
Tssr39695	transcription start site region 39695	1513 bp upstream
Tssr39696	transcription start site region 39696	1563 bp upstream
Zfp46	zinc finger protein 46	1538 bp upstream