rs27623159 SNP Detail

Summary

• ID
  rs27623159
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136010096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCCCAGTA GCAAATGCAC
  ACTTTAAAGA CGTGCAAGAA GGGTCCTCAC TTCCCCAGGA CAGACCAGGC TGGCGGGAAG
  CCTCCACACC CAGTAGGTCA TCATCATTTG CTGAATGCTG ATGGAACAGA CAGGACTTTC
  CAACTCAATC TAGAAAACCC AGAAGAGTAT TTCTGCGTAA CCCTGAACAA TAGGGCAGGA
  M
  GTGGCTTCCT CCTCCAGGGA CTGCCTCCCA GCCCTTGGAA GCAAGCTACT AACTGGAACA
  GGAAGCCCCA CAGCCTCTGT CTTCCCTTCC CCACTCCTCC AGGGGCTTCC CAACCTGCTC
  CCACCTGCAC TCCTCTCCCA GGTGGGTAAA GAAAAAGCAC ACACTAGGGG CAAGCTGACA
  AGCAGGGCAC ACAGAGCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777193	NES09155676	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	A	A	A	C	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623159					SNP	C	A	A	A	A	A	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777193	NES09155676	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136010096 () rs orientation: forward

Symbol	Name	Function Class
Rr602339	regulatory region 602339	within coordinates
Rr602340	regulatory region 602340	839 bp proximal
Tssr39694	transcription start site region 39694	1852 bp upstream
Tssr39695	transcription start site region 39695	1873 bp upstream
Tssr39696	transcription start site region 39696	1923 bp upstream
Zfp46	zinc finger protein 46	1898 bp upstream