rs27623160 SNP Detail

Summary

• ID
  rs27623160
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136010069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATTTACA GAGCCCCACA
  GGAACACTCG CCCAGTAGCA AATGCACACT TTAAAGACGT GCAAGAAGGG TCCTCACTTC
  CCCAGGACAG ACCAGGCTGG CGGGAAGCCT CCACACCCAG TAGGTCATCA TCATTTGCTG
  AATGCTGATG GAACAGACAG GACTTTCCAA CTCAATCTAG AAAACCCAGA AGAGTATTTC
  W
  GCGTAACCCT GAACAATAGG GCAGGAAGTG GCTTCCTCCT CCAGGGACTG CCTCCCAGCC
  CTTGGAAGCA AGCTACTAAC TGGAACAGGA AGCCCCACAG CCTCTGTCTT CCCTTCCCCA
  CTCCTCCAGG GGCTTCCCAA CCTGCTCCCA CCTGCACTCC TCTCCCAGGT GGGTAAAGAA
  AAAGCACACA CTAGGGGCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777194	NES09155675	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T	T	T	A	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623160					SNP	A	T	T	T	T	T	T	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777194	NES09155675	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136010069 () rs orientation: forward

Symbol	Name	Function Class
Rr602339	regulatory region 602339	within coordinates
Rr602340	regulatory region 602340	866 bp proximal
Tssr39694	transcription start site region 39694	1879 bp upstream
Tssr39695	transcription start site region 39695	1900 bp upstream
Tssr39696	transcription start site region 39696	1950 bp upstream
Zfp46	zinc finger protein 46	1925 bp upstream