rs27624374 SNP Detail

Summary

• ID
  rs27624374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148712163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACACGATA GTCGTGATAC
  TCTCTCCTCT TTCAATAAGT GAAGAAACTG AGGCACAGAG TTGAGTACCT TGCATGAAGT
  CACCATGAGA AAGAGGCCCC ACTAGGGTCT GAATCCTACA GCAAAAAACT ACTTGGATGT
  TTCAGTATTT CGGTTCCAGT TGACGAGTCC TAGTATAACT TTAAAAAGGC TGAAGGCTAG
  Y
  TCTACCACCA AGCAGCAGAT GTAGACTCTT TACTCAGGGT TGGAATTTCT TGGTGTATCA
  GATTCAAAGC TTAGGCACAA AGGTTTTACA CAGTTGCTTT ATTTACTGAA ACTGGGTCTT
  GCTGTACAGA ACAGGCTGGC CTTGAGCTTG CTGGGTTCCT CCTGCCTCTG CCTCCCTTCT
  GGGAGGAATG GGGTAGGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37803028	NES09112264	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27624374					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803028	NES09112264	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148712163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15308	CpG island 15308	494 bp distal
Rr100546	regulatory region 100546	162 bp distal
Rr398860	regulatory region 398860	456 bp downstream
Tardbp	TAR DNA binding protein	687 bp upstream
Tssr44612	transcription start site region 44612	960 bp upstream
Tssr44613	transcription start site region 44613	931 bp upstream
Tssr44614	transcription start site region 44614	673 bp upstream