rs27624751 SNP Detail

Summary

• ID
  rs27624751
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136347574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCAGAT CTCTGAGATC
  AAGGCCAGCC TGGTCTACAG AGCAAGTTCC AGGCCAGCCA GGGCTACACA GAGAAACCCT
  GACTCAGAAA ACCAACCAAC CGACCAAACA AACAAACAAG CAAGCAAAAA TGGCAAGTTT
  TATAAACCCA GAAACTAAAA GACAGTTCTG AGAAGGGAGT TACCTGCTTC CTGAGAGGAG
  Y
  GGCCCAGGAA AGGAGGTAAT TACAGTGACT GTGTTTGTTG GGCGCTGTTG GCATGCAGTG
  GCCCGTGTGC TCTCCCTGCG ATCACGCTCC TATTCAGTCT TCACTCCCAC ACCACTAGGG
  TAGAGTCTTC ATTCACGCAC GTACACATGA GGTCTGAGAA ATACAGAATC TCTGATCAAA
  GCCACACGTA GCAAGGATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37776285	NES09145048	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27624751					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37776285	NES09145048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136347574 () rs orientation: forward

Symbol	Name	Function Class
Rr86434	regulatory region 86434	827 bp proximal
Rr103033	regulatory region 103033	175 bp distal
Rr106544	regulatory region 106544	1183 bp proximal
Rr398615	regulatory region 398615	1062 bp upstream