rs27624753 SNP Detail

Summary

• ID
  rs27624753
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136347501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGGTCTA CAGAGCAAGT TCCAGGCCAG CCAGGGCTAC
  ACAGAGAAAC CCTGACTCAG AAAACCAACC AACCGACCAA ACAAACAAAC AAGCAAGCAA
  R
  AATGGCAAGT TTTATAAACC CAGAAACTAA AAGACAGTTC TGAGAAGGGA GTTACCTGCT
  TCCTGAGAGG AGCGGCCCAG GAAAGGAGGT AATTACAGTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37776287	NES09145046	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27624753					SNP	A	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37776287	NES09145046	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136347501 () rs orientation: forward

Symbol	Name	Function Class
Rr86434	regulatory region 86434	900 bp proximal
Rr103033	regulatory region 103033	102 bp distal
Rr106544	regulatory region 106544	1256 bp proximal
Rr398615	regulatory region 398615	1135 bp upstream