rs27626111 SNP Detail

Summary

• ID
  rs27626111
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139551407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAA CAGTTATCGC CTCATTGTAG
  W
  GTCGCTTAGT CTCAGATCCC TCCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37792139	NES09130402	PERLEGEN	MM_PANEL2	f	SNP			A	T			A		A	A		A
ss45632910	mCV23720209	ABI	CRAMUS_MOUSE	f	SNP	T	T			T	A
ss321384724	CHEV_4_139380011	CHEVERUD	SCREENING_POP	f	SNP								A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27626111					SNP	T	T	A	T	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37792139	NES09130402	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139551407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15176	CpG island 15176	1765 bp distal
Cpgi15177	CpG island 15177	within coordinates
Pax7	paired box 7	within coordinates