rs27628744 SNP Detail

Summary

• ID
  rs27628744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169731452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTCTTT CCTCCCCTGT
  GCCCACCTCT AATCCTGGGA ACACCCTACC AAATAGCAAA GTCAAATTTT CATTTAAAAT
  TCTTTGGAAA GTATTAAACG GGCAGCCCCT CTTTTAGGAC ATAAGTAAGC TAAAACAATT
  CCCCCATGAA TTCGCATATA CCTTTAAAAG TCTCTTGCTC TTGACTGGAA ATTAAACAGC
  R
  AGTAAATCAT TGAGCCTCGA ATGCATAAGG ACTTCAAATT ATAGTCATTA CCACGTAATA
  TAGTGTACGC GTTTAACGGC ACACCTAACC TTGAGACTGC TGGCAGAAAT GTATTCTAGT
  CCAACAAGCT GCCTGCCACT TCTGTTATGG ATAGCTTGAT GAAAATGTAT GTCGGGGGGC
  GGGGGTGTGA AACACACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37819793	NES08714165	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27628744					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37819793	NES08714165	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169731452 () rs orientation: forward

Symbol	Name	Function Class
Rr60048	regulatory region 60048	1550 bp proximal
Rr374253	regulatory region 374253	456 bp downstream
Tshz2	teashirt zinc finger family member 2	within coordinates
Tssr27898	transcription start site region 27898	1492 bp upstream