rs27628745 SNP Detail

Summary

• ID
  rs27628745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169731252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAAACAT ATATATAATG
  ATGGTTTTAA ATGGCTATGG AATTCTATCA TCACCTGGAA TTCTAATCTT AGCTGATATG
  GGGGAGGGTA CAATGTTTGA AAAAAATGAC ATGGTATTTT ATAAAACATA TCAAGATTCA
  GTGGGATATT TAAGAGTCCA CCATATCTAC GCATTTCTAA ATGGCACCAA TTCCAATCTG
  R
  ATTTTCTTTC CTCCCCTGTG CCCACCTCTA ATCCTGGGAA CACCCTACCA AATAGCAAAG
  TCAAATTTTC ATTTAAAATT CTTTGGAAAG TATTAAACGG GCAGCCCCTC TTTTAGGACA
  TAAGTAAGCT AAAACAATTC CCCCATGAAT TCGCATATAC CTTTAAAAGT CTCTTGCTCT
  TGACTGGAAA TTAAACAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37819794	NES08714164	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27628745					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37819794	NES08714164	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169731252 () rs orientation: forward

Symbol	Name	Function Class
Rr60048	regulatory region 60048	1750 bp proximal
Rr374253	regulatory region 374253	256 bp downstream
Tshz2	teashirt zinc finger family member 2	within coordinates
Tssr27898	transcription start site region 27898	1292 bp upstream