rs27628754 SNP Detail

Summary

• ID
  rs27628754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169729228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTAGCTGA CTTTTATCGA
  CAGCGCTCCT TCCCTGTTTC CTTCCTACAT TCATATCCCT ATAGAAGAGC AGGGACCCTT
  AAGGGGGACT GTCGGGATGC ACTCTTCTAT GGAGCAGGGA GATAAAAATG CCTTTAGATT
  TTCCTTTAGG ATAAACTCGG GATCAGAGTC CACCTTTACC AGATGCAAAA CATCCCCGTG
  R
  GTTTATTTCA CATACAGAGA TGGGTAGTCG AAGGCTGTAC ACAGCCAAGT GAGTAGGGTC
  TGTCCAACAG CTTCAAGATG TTATTTTTCA AATTGGGCTG GAGGTGCACC TTGGTAGTAG
  AGTTCTTGCC CAGCATACAC AAGGTCTTGG GTTCAAGTCC CAGTACCAAA ATGAGAAAAG
  AAAGGAATTT GTACCATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37819803	NES08714155	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27628754					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37819803	NES08714155	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169729228 () rs orientation: forward

Symbol	Name	Function Class
Rr374253	regulatory region 374253	within coordinates
Tshz2	teashirt zinc finger family member 2	within coordinates
Tssr27898	transcription start site region 27898	715 bp downstream