rs27628756 SNP Detail

Summary

• ID
  rs27628756
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169728555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTG ACCACGGCCT TGTGAGGAGC
  K
  TGTTAAAAAG AGATGGGTCT GCTTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37819805	NES08714152	PERLEGEN	MM_PANEL2	f	SNP		G		G	G		T	G
ss45376221	mCV22900734	ABI	CRAMUS_MOUSE	f	SNP	G		T	G
ss148293418	ENSMUSSNP4107916	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G
ss320614471	CHEV_2_169712135	CHEVERUD	SCREENING_POP	f	SNP						G			G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27628756					SNP	G	G	T	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37819805	NES08714152	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169728555 () rs orientation: forward

Symbol	Name	Function Class
Rr374253	regulatory region 374253	430 bp upstream
Tshz2	teashirt zinc finger family member 2	within coordinates
Tssr27898	transcription start site region 27898	1388 bp downstream