rs27629675 SNP Detail

Summary

• ID
  rs27629675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172188172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGG TGCCGCCGGT ACATCTACCG
  Y
  TTCCCTGTGC TCCTTGCGCC ACCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37809103	NES08702724	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	C	C		C	C	T	C		C		C	T	C		C
ss45298084	mCV23771043	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		C
ss148314003	ENSMUSSNP1990595	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							C					C
ss320618211	CHEV_2_172171752	CHEVERUD	SCREENING_POP	f	SNP													T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27629675					SNP	T	T	T	T	C	C	C	C	C	C	T	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809103	NES08702724	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172188172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	within coordinates
Fam210b	family with sequence similarity 210, member B	within coordinates
Rr56171	regulatory region 56171	within coordinates
Tssr21944	transcription start site region 21944	662 bp downstream
Tssr21945	transcription start site region 21945	626 bp downstream
Tssr21946	transcription start site region 21946	605 bp downstream
Tssr27939	transcription start site region 27939	569 bp upstream